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similarity plot simplots analysis  (Simplot Science)
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Simplot Science similarity plot simplots analysis
<t>Simplot</t> analysis of eight BTV isolates. BTV-1/YNDH/103/2013 was used as the query. The cyan, yellow, blue, aubergine, blue-purple, green, and pink lines represent the strains NRT37/ABT/HSR, Y863, 7766, YTS-4, B105/YN/1996, RSArrr/16, and IND2004/09, respectively. The Y-axis indicates the degree of sequence similarity, and the X-axis indicates the genomic positions of segments S1 to S10.
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Simplot analysis of eight BTV isolates. BTV-1/YNDH/103/2013 was used as the query. The cyan, yellow, blue, aubergine, blue-purple, green, and pink lines represent the strains NRT37/ABT/HSR, Y863, 7766, YTS-4, B105/YN/1996, RSArrr/16, and IND2004/09, respectively. The Y-axis indicates the degree of sequence similarity, and the X-axis indicates the genomic positions of segments S1 to S10.

Journal: Veterinary Sciences

Article Title: Genomic Characteristics of a Novel Recombinant Bluetongue Virus Serotype 1 in Yunnan, China

doi: 10.3390/vetsci12090886

Figure Lengend Snippet: Simplot analysis of eight BTV isolates. BTV-1/YNDH/103/2013 was used as the query. The cyan, yellow, blue, aubergine, blue-purple, green, and pink lines represent the strains NRT37/ABT/HSR, Y863, 7766, YTS-4, B105/YN/1996, RSArrr/16, and IND2004/09, respectively. The Y-axis indicates the degree of sequence similarity, and the X-axis indicates the genomic positions of segments S1 to S10.

Article Snippet: The potential reassortment or recombination events were further verified via similarity plot (SimPlots) analysis in SimPlot version 3.5.1 [ ] using a sliding window of 200 bp with a step size of 20 bp, and finally, a phylogenetic tree was constructed using MEGA 11.0.13 software.

Techniques: Sequencing